Almost 88.67% of the population in Indonesia follows Islam. As a result, various schools and universities in Indonesia include Islamic education studies in their curriculum. In this regard, learning management efficiency is vital to ensure significant learning outcomes for the students. However, many higher education institutions in Indonesia have taken initiatives to promote e-learning strategies to improve students’ learning mechanisms. The education management has encouraged the students’ feedback to make the required changes accordingly. Thus, the main purpose of this quantitative study is to compare the impact of educational management, e-learning, and student feedback on learning management system efficiency between students enrolled in Islam education studies (group 1) and students enrolled in higher education institutes (group 2) in Indonesia. For this research, the statistical data were collected from 100 respondents of group 1 and 115 respondents of group 2 via survey method, and statistical analysis was conducted. The outcomes of this study showed that the relationship between student feedback and learning management system efficiency (LMSE) was significant for both groups. In contrast, the impact of educational management on LMSE was significant in group 1 in contrast to group 2, and the impact of e-learning on LMSE was significant in group 2 in contrast to group 1.